!-----------------------------------------------------------------------------------------------------------------------------------
! This file is part of ReMKiT1D.
!
! ReMKiT1D is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as
! published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
!
! ReMKiT1D is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of
! MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
!
! You should have received a copy of the GNU General Public License along with ReMKiT1D. If not, see <https://www.gnu.org/licenses/>.
!
! Copyright 2023 United Kingdom Atomic Energy Authority (stefan.mijin@ukaea.uk)
!-----------------------------------------------------------------------------------------------------------------------------------
module matrix_term_abstract_class
!! author: Stefan Mijin
!!
!! Houses abstract matrix term with default interface
use data_kinds ,only: rk, ik
use runtime_constants ,only: debugging, assertions
use god_objects ,only: Object
use assertion_utility ,only: assert, assertIdentical, assertPure
use support_types ,only: RealArray ,IntArray ,StringArray
use variable_list_class ,only: VariableList
use variable_container_class ,only: VariableContainer
use sparse_row_data_class ,only: SparseRowData
use petsc_preallocation_data_class ,only: PETScPreallocationData
use petsc_controller_class ,only: PETScController
use basic_interfaces ,only: coordMapping
use indexing_class ,only: Indexing
use support_functions ,only: allCombinations
use term_abstract_class ,only: Term
use modelbound_data_abstract_class ,only: ModelboundData
use model_surrogate_class ,only: ModelSurrogate
implicit none
private
type ,public :: DataCoords
!! Data type used to store global coordinates of any given matrix row
integer(ik) ,allocatable ,dimension(:) :: rowCoords !! Size 1 or 3 array depending on whether the evolved variable is a distribution
integer(ik) ,allocatable ,dimension(:,:) :: colCoords !! Size (1,:) or (3,:) depending on whether the implicit variable is a distribution
!! - the second dimension has the size of the column vector corresponding to given row of matrix
end type DataCoords
type ,public :: MatrixTermIndexingData
!! Indexing data used by the matrix term
type(DataCoords) ,allocatable ,dimension(:) :: rowDataCoordsGlobal !! Global coordinates of each row in matrix
type(DataCoords) ,allocatable ,dimension(:) :: rowDataCoordsLocal !! Local coordinates of each row in matrix (unflattened)
integer(ik) ,allocatable ,dimension(:) :: localRowIndices !! Local row indices corresponding to stored evolved variable (flattened)
type(IntArray) ,allocatable ,dimension(:) :: localColIndices !! Local col indices corresponding to stored implicit variable (flattened)
integer(ik) ,allocatable ,dimension(:) :: rowReqVarIndices !! Indices of variables entering the matrix as a function of the row coordinates
integer(ik) ,allocatable ,dimension(:) :: colReqVarIndices !! Indices of variables entering the matrix as s function of the column coordinates
character(:) ,allocatable :: rowVarName !! Name of the evolved/row variable
character(:) ,allocatable :: colVarName !! Name of the implicit/column variable
end type
type ,public ,extends(term) ,abstract :: MatrixTerm
!! Abstract matrix term containing general matrix construction routines and interface with PETSc.
!! The values of a matrix are by default constructed by evaluating row and column functions for each element, and multiplying with the corresponding
!! multiplicative and normalization constants
type(SparseRowData) ,private :: rowData !! Matrix object in sparse row data form
type(RealArray) ,allocatable ,dimension(:) ,private :: multConst !! Multiplicative constants for each row/column corresponding to the matrix structure
real(rk) ,private :: normalizationConst = real(1.0d0,kind=rk) !! Normalization constant for this term
type(MatrixTermIndexingData) ,private :: indexingData !! Indexing data used to determing coordinates and required variables
logical ,private :: fixedMatrix = .false. !! If true the matrix is constructed only once
logical ,private :: fixedMatrixCalculated = .false. !! True if the fixed matrix has been calculated
logical ,private :: stationaryEvolvedVar = .false. !! If true, this term is always sent to PETSc with multiplicative constant -1
logical ,private :: hasNonTrivialRowFun = .true. !! Set to false to not call row function. Defaults to true.
logical ,private :: hasNonTrivialColFun = .true. !! Set to false to not call col function. Defaults to true.
type(RealArray) ,allocatable ,dimension(:) ,private :: colBuffer !Buffer for column vector values
real(rk) ,allocatable ,dimension(:) ,private :: rowBuffer !Buffer for row vector values
contains
procedure ,public :: calculateValues
procedure ,public :: setNormalizationConst
procedure ,public :: getNormalizationConst
procedure ,public :: setReqVars
procedure ,public :: setEvolvedAndImplicitVar
procedure ,public :: initRowData
procedure ,public :: evaluate => evaluateMatTerm
procedure ,public :: getMultConst
procedure ,public :: setMultConst
procedure ,public :: getIndexingData
procedure ,public :: setFixedMatrix
procedure ,public :: setNontrivialRowFun
procedure ,public :: setNontrivialColFun
procedure ,private :: calculateRows => unityRow
procedure ,private :: calculateCols => unityCol
procedure ,public :: addRowDataToPreallocationData
procedure ,public :: addRowDataPatternToController
procedure ,public :: addRowValuesToPETScMatrix
procedure ,public :: getVarName => getRowVarName
procedure ,public :: getRowData
procedure ,public :: update => matTermUpdate
procedure ,public :: matrixTermUpdate => matrixNoUpdate
end type MatrixTerm
!-----------------------------------------------------------------------------------------------------------------------------------
interface
!-----------------------------------------------------------------------------------------------------------------------------------
pure module subroutine unityRow(this,varCont,rowVals,indexingData)
!! Default row function. In general should use the passed variable container, row buffer, and matrix indexing data
!! to provide values which is only a function of the row
class(MatrixTerm) ,intent(inout) :: this
type(VariableContainer) ,intent(in) :: varCont
real(rk) ,dimension(:) ,intent(inout) :: rowVals
type(MatrixTermIndexingData) ,intent(in) :: indexingData
end subroutine unityRow
!-----------------------------------------------------------------------------------------------------------------------------------
pure module subroutine unityCol(this,varCont,colVals,indexingData)
!! Default column function. In general should provide values for each column
class(MatrixTerm) ,intent(inout) :: this
type(VariableContainer) ,intent(in) :: varCont
type(RealArray) ,dimension(:) ,intent(inout) :: colVals
type(MatrixTermIndexingData) ,intent(in) :: indexingData
end subroutine unityCol
!-----------------------------------------------------------------------------------------------------------------------------------
pure module subroutine calculateValues(this,varCont)
!! Default matrix entry calculation routine - loops over each row and applies rowFun and colFun to variables in provided container
class(MatrixTerm) ,intent(inout) :: this
type(VariableContainer) ,intent(in) :: varCont
end subroutine calculateValues
!-----------------------------------------------------------------------------------------------------------------------------------
pure module subroutine setNormalizationConst(this,norm)
!! Setter for normalizationConst
class(MatrixTerm) ,intent(inout) :: this
real(rk) ,intent(in) :: norm
end subroutine setNormalizationConst
!-----------------------------------------------------------------------------------------------------------------------------------
pure module function getNormalizationConst (this) result(norm)
!! Getter for normalizationConst
class(MatrixTerm) ,intent(in) :: this
real(rk) :: norm
end function getNormalizationConst
!-----------------------------------------------------------------------------------------------------------------------------------
pure module subroutine setReqVars(this,rowReqVars,colReqVars,varCont)
!! Set variable names required by the row and column functions and find their indices in variable container
class(MatrixTerm) ,intent(inout) :: this
type(StringArray) ,dimension(:) ,intent(in) :: rowReqVars
type(StringArray) ,dimension(:) ,intent(in) :: colReqVars
type(VariableContainer) ,intent(in) :: varCont
end subroutine setReqVars
!-----------------------------------------------------------------------------------------------------------------------------------
pure module subroutine setEvolvedAndImplicitVar(this,rowVarName,colVarName,varCont)
!! Set evolved (row) and implicit (column) variable names, and check if evolved variable is stationary using varCont
class(MatrixTerm) ,intent(inout) :: this
character(*) ,intent(in) :: rowVarName
character(*) ,intent(in) :: colVarName
type(VariableContainer) ,intent(in) :: varCont
end subroutine setEvolvedAndImplicitVar
!-----------------------------------------------------------------------------------------------------------------------------------
module subroutine initRowData(this,rowCoords,rowToColMapping,indexingObj)
!! Initialize row data objects based on a set of evolved global coordinates, the row/col var name, and a function that returns
!! column coordinates given a row coordinate input. Requires a reference Indexing object.
class(MatrixTerm) ,intent(inout) :: this
integer(ik) ,dimension(:,:) ,intent(in) :: rowCoords
procedure(coordMapping) :: rowToColMapping
type(Indexing) ,intent(in) :: indexingObj
end subroutine initRowData
!-----------------------------------------------------------------------------------------------------------------------------------
module subroutine addRowDataToPreallocationData(this,petscPreallocData)
!! Add this term's row data to a PETSc preallocation object
class(MatrixTerm) ,intent(inout) :: this
type(PETScPreallocationData) ,intent(inout) :: petscPreallocData
end subroutine addRowDataToPreallocationData
!-----------------------------------------------------------------------------------------------------------------------------------
module subroutine addRowDataPatternToController(this,petscCont)
!! Add this term's row data to a petsc preallocation object in PETSc controller
class(MatrixTerm) ,intent(in) :: this
type(PETScController) ,intent(inout) :: petscCont
end subroutine addRowDataPatternToController
!-----------------------------------------------------------------------------------------------------------------------------------
module subroutine addRowValuesToPETScMatrix(this,petscCont,mult,petscGroup)
!! Add this term's row values to a petsc matrix object in PETSc controller, multiplied by mult. If evolved variable is
!! stationary mult is ignored and set to -1
class(MatrixTerm) ,intent(in) :: this
type(PETScController) ,intent(inout) :: petscCont
real(rk) ,intent(in) :: mult
integer(ik) ,optional ,intent(in) :: petscGroup
end subroutine addRowValuesToPETScMatrix
!-----------------------------------------------------------------------------------------------------------------------------------
pure module function evaluateMatTerm (this,varCont) result(res)
!! Get explicit value for the term by crudely dotting each sparse row with the locally stored implicit variable vector in varCont
class(MatrixTerm) ,intent(in) :: this
type(VariableContainer) ,intent(in) :: varCont
real(rk) ,allocatable ,dimension(:) :: res
end function evaluateMatTerm
!-----------------------------------------------------------------------------------------------------------------------------------
pure module subroutine setMultConst(this,multConst)
!! Setter for multConst
class(MatrixTerm) ,intent(inout) :: this
type(RealArray) ,dimension(:) ,intent(in) :: multConst
end subroutine setMultConst
!-----------------------------------------------------------------------------------------------------------------------------------
pure module function getMultConst (this) result(multConst)
!! Getter for multConst
class(MatrixTerm) ,intent(in) :: this
type(RealArray) ,allocatable ,dimension(:) :: multConst
end function getMultConst
!-----------------------------------------------------------------------------------------------------------------------------------
pure module function getRowVarName(this) result(name)
!! Get name of the evolved variable of this term
class(MatrixTerm) ,intent(in) :: this
character(:) ,allocatable :: name
end function getRowVarName
!-----------------------------------------------------------------------------------------------------------------------------------
pure module subroutine setFixedMatrix(this,isFixed)
!! Set whether the matrix is fixed -> only calculated once
class(MatrixTerm) ,intent(inout) :: this
logical ,intent(in) :: isFixed
end subroutine setFixedMatrix
!-----------------------------------------------------------------------------------------------------------------------------------
pure module subroutine setNonTrivialRowFun(this,nontriv)
!! Set whether the matrix has a non-trivial row function
class(MatrixTerm) ,intent(inout) :: this
logical ,intent(in) :: nontriv
end subroutine setNonTrivialRowFun
!-----------------------------------------------------------------------------------------------------------------------------------
pure module subroutine setNonTrivialColFun(this,nontriv)
!! Set whether the matrix has a non-trivial col function
class(MatrixTerm) ,intent(inout) :: this
logical ,intent(in) :: nontriv
end subroutine setNonTrivialColFun
!-----------------------------------------------------------------------------------------------------------------------------------
pure module function getIndexingData(this) result(indData)
!! Getter for indexingData
class(MatrixTerm) ,intent(in) :: this
type(MatrixTermIndexingData) :: indData
end function getIndexingData
!-----------------------------------------------------------------------------------------------------------------------------------
pure module function getRowData(this) result(rowData)
!! Getter for rowData
class(MatrixTerm) ,intent(in) :: this
type(SparseRowData) :: rowData
end function
!-----------------------------------------------------------------------------------------------------------------------------------
module subroutine matTermUpdate(this,varCont,modelData,hostModel)
!! Default matrix term update, call matrixTermUpdate
class(MatrixTerm) ,intent(inout) :: this
type(VariableContainer) ,intent(in) :: varCont
class(ModelboundData) ,optional ,intent(in) :: modelData
class(ModelSurrogate) ,optional ,intent(in) :: hostModel
end subroutine matTermUpdate
!-----------------------------------------------------------------------------------------------------------------------------------
module subroutine matrixNoUpdate(this,varCont,indexingData,modelData,hostModel)
!! Default MatrixTerm updateMatTerm function - does nothing
class(MatrixTerm) ,intent(inout) :: this
type(VariableContainer) ,intent(in) :: varCont
type(MatrixTermIndexingData) ,intent(in) :: indexingData
class(ModelboundData) ,optional ,intent(in) :: modelData
class(ModelSurrogate) ,optional ,intent(in) :: hostModel
end subroutine matrixNoUpdate
!-----------------------------------------------------------------------------------------------------------------------------------
end interface
!-----------------------------------------------------------------------------------------------------------------------------------
end module matrix_term_abstract_class
!-----------------------------------------------------------------------------------------------------------------------------------
